From 06658c7a8314293e38c9e2e76a0eaf3aee2b6f9a Mon Sep 17 00:00:00 2001 From: KazeemHamzat Date: Tue, 9 Jan 2024 15:22:01 +0000 Subject: [PATCH 1/5] Add Patient, SR and RelatedPerson Resources Add Patient, SR and RelatedPerson Resources --- ...-AnitaLambertsDeceasedPatient-Example.json | 88 +++++++++++++++ ...-AnitaLambertsDeceasedPatient-Example.json | 21 ++++ ...TestOrderForm-DeceasedPatient-Example.json | 102 ++++++++++++++++++ 3 files changed, 211 insertions(+) create mode 100644 Patient/Patient-AnitaLambertsDeceasedPatient-Example.json create mode 100644 RelatedPerson/RelatedPerson-AnitaLambertsDeceasedPatient-Example.json create mode 100644 ServiceRequest/ServiceRequest-NonWGSTestOrderForm-DeceasedPatient-Example.json diff --git a/Patient/Patient-AnitaLambertsDeceasedPatient-Example.json b/Patient/Patient-AnitaLambertsDeceasedPatient-Example.json new file mode 100644 index 00000000..d2c8d829 --- /dev/null +++ b/Patient/Patient-AnitaLambertsDeceasedPatient-Example.json @@ -0,0 +1,88 @@ +{ + "resourceType": "Patient", + "id": "Patient-AnitaLambertsDeceasedPatient-Example", + "extension": [ + { + "url": "https://fhir.hl7.org.uk/StructureDefinition/Extension-UKCore-BirthSex", + "valueCode": "F" + }, + { + "url": "https://fhir.hl7.org.uk/StructureDefinition/Extension-UKCore-EthnicCategory", + "valueCodeableConcept": { + "coding": [ + { + "system": "https://fhir.hl7.org.uk/CodeSystem/UKCore-EthnicCategoryEngland", + "code": "A", + "display": "White - British" + } + ] + } + } + ], + "identifier": [ + { + "system": "https://fhir.nhs.uk/Id/nhs-number", + "value": "8449303649", + "extension": [ + { + "url": "https://fhir.hl7.org.uk/StructureDefinition/Extension-UKCore-NHSNumberVerificationStatus", + "valueCodeableConcept": { + "coding": [ + { + "system": "https://fhir.hl7.org.uk/CodeSystem/UKCore-NHSNumberVerificationStatusEngland", + "version": "2.2.0", + "code": "01", + "display": "Number present and verified" + } + ] + } + } + ] + } + ], + "name": [ + { + "given": [ + "Anita" + ], + "family": "Lamberts" + } + ], + "gender": "female", + "birthDate": "1993-11-14", + "deceasedBoolean": true, + "address": [ + { + "line": [ + "1, Vale Roads, Claygate", + "Esher", + "Surrey" + ], + "postalCode": "BM17 2QN" + } + ], + "generalPractitioner": [ + { + "identifier": { + "system": "https://fhir.hl7.org.uk/Id/gmp-number", + "value": "G9999999" + }, + "display": "Dr. Aero Smith" + }, + { + "identifier": { + "system": "https://fhir.hl7.org.uk/Id/ODS-code", + "value": "AP123" + }, + "display": "123 Test Practice" + } + ], + "link": [ + { + "other": { + "reference": "https://api.service.nhs.uk/personal-demographics/FHIR/R4/Patient/8449303649" + }, + "type": "seealso" + } + ] +} \ No newline at end of file diff --git a/RelatedPerson/RelatedPerson-AnitaLambertsDeceasedPatient-Example.json b/RelatedPerson/RelatedPerson-AnitaLambertsDeceasedPatient-Example.json new file mode 100644 index 00000000..579e2dfa --- /dev/null +++ b/RelatedPerson/RelatedPerson-AnitaLambertsDeceasedPatient-Example.json @@ -0,0 +1,21 @@ +{ + "resourceType": "RelatedPerson", + "id":"RelatedPerson-AnitaLambertsDeceasedPatient-Example", + "patient": { + "identifier": { + "system": "https://fhir.nhs.uk/Id/nhs-number", + "value": "8449303649" + } + }, + "relationship": [ + { + "coding": [ + { + "system": "http://terminology.hl7.org/CodeSystem/v3-RoleCode", + "code": "PRN", + "display": "Parent" + } + ] + } + ] +} \ No newline at end of file diff --git a/ServiceRequest/ServiceRequest-NonWGSTestOrderForm-DeceasedPatient-Example.json b/ServiceRequest/ServiceRequest-NonWGSTestOrderForm-DeceasedPatient-Example.json new file mode 100644 index 00000000..65d11861 --- /dev/null +++ b/ServiceRequest/ServiceRequest-NonWGSTestOrderForm-DeceasedPatient-Example.json @@ -0,0 +1,102 @@ +{ + "resourceType": "ServiceRequest", + "id": "ServiceRequest-NonWGSTestOrderForm-DeceasedPatient-Example", + "extension": [ + { + "url": "https://fhir.hl7.org.uk/StructureDefinition/Extension-UKCore-Coverage", + "valueCodeableConcept": { + "coding": [ + { + "system": "https://fhir.hl7.org.uk/CodeSystem/UKCore-FundingCategory", + "code": "nhs", + "display": "NHS" + } + ] + } + } + ], + "status": "active", + "intent": "order", + "category": [ + { + "coding": [ + { + "system": "https://fhir.hl7.org.uk/CodeSystem/UKCore-GenomeSequencingCategory", + "code": "rare-disease-non-wgs", + "display": "Rare Disease - Non-WGS" + } + ] + } + ], + "priority": "routine", + "code": { + "coding": [ + { + "system": "https://fhir.nhs.uk/CodeSystem/England-GenomicTestDirectory", + "code": "R138", + "display": "Sudden Cardiac Death" + } + ] + }, + "subject": { + "reference": "Patient/Patient-AnitaLambertsDeceasedPatient-Example", + "identifier": { + "system": "https://fhir.nhs.uk/Id/nhs-number", + "value": "8449303649" + } + }, + "authoredOn": "2023-11-01T10:00:00Z", + "requester": { + "reference": "PractitionerRole/PractitionerRole-GeneSmith-Example" + }, + "reasonCode": [ + { + "coding": [ + { + "system": "http://snomed.info/sct", + "code": "103693007", + "display": "Diagnostic procedure" + } + ] + } + ], + "supportingInfo": [ + { + "reference": "Observation/Observation-GenomicEthnicity-Example" + }, + { + "reference": "Observation/Observation-NoPregnancy-Example" + }, + { + "reference": "Observation/Observation-DiseaseStatus-Example" + }, + { + "reference": "Observation/Observation-NonConsanguinousUnion-Example" + }, + { + "reference": "FamilyMemberHistory/FamilyMemberHistory-NonConsanguinousUnion-Example" + }, + { + "reference": "Observation/Observation-NoBoneMarrowTransplant-Example" + }, + { + "reference": "Observation/Observation-NoTransfusion-Example" + }, + { + "reference": "Observation/Observation-RiskOfInfection-Example" + } + ], + "specimen": [ + { + "display": "Blood EDTA Specimen to be provided later" + } + ], + "note": [ + { + "text": "No family history of genomic testing" + }, + { + "text": "Free text for diagnosis/reason for referral, relevant information including family history, phenotypic details/ HPO Terms." + } + ] +} \ No newline at end of file From aeba04142d92af2d5514217141d136f7d7f0078d Mon Sep 17 00:00:00 2001 From: KazeemHamzat Date: Wed, 24 Jan 2024 16:39:39 +0000 Subject: [PATCH 2/5] Add Patient resource-Patient-AnitaLambertsMotherDeceasedPatient-Example Patient-AnitaLambertsMotherDeceasedPatient-Example --- ...LambertsMotherDeceasedPatient-Example.json | 87 +++++++++++++++++++ 1 file changed, 87 insertions(+) create mode 100644 Patient/Patient-AnitaLambertsMotherDeceasedPatient-Example.json diff --git a/Patient/Patient-AnitaLambertsMotherDeceasedPatient-Example.json b/Patient/Patient-AnitaLambertsMotherDeceasedPatient-Example.json new file mode 100644 index 00000000..298e335c --- /dev/null +++ b/Patient/Patient-AnitaLambertsMotherDeceasedPatient-Example.json @@ -0,0 +1,87 @@ +{ + "resourceType": "Patient", + "id": "Patient-AnitaLambertsMotherDeceasedPatient-Example", + "extension": [ + { + "url": "https://fhir.hl7.org.uk/StructureDefinition/Extension-UKCore-BirthSex", + "valueCodeableConcept": { + "coding": [ + { + "system": "https://fhir.hl7.org.uk/CodeSystem/UKCore-BirthSex", + "code": "F", + "display": "Female" + } + ] + } + }, + { + "url": "https://fhir.hl7.org.uk/StructureDefinition/Extension-UKCore-EthnicCategory", + "valueCodeableConcept": { + "coding": [ + { + "system": "https://fhir.hl7.org.uk/CodeSystem/UKCore-EthnicCategoryEngland", + "code": "A", + "display": "White - British" + } + ] + } + } + ], + "identifier": [ + { + "system": "https://fhir.nhs.uk/Id/nhs-number", + "value": "8449303650", + "extension": [ + { + "url": "https://fhir.hl7.org.uk/StructureDefinition/Extension-UKCore-NHSNumberVerificationStatus", + "valueCodeableConcept": { + "coding": [ + { + "system": "https://fhir.hl7.org.uk/CodeSystem/UKCore-NHSNumberVerificationStatusEngland", + "version": "2.2.0", + "code": "01", + "display": "Number present and verified" + } + ] + } + } + ] + } + ], + "gender": "female", + "deceasedBoolean": false, + "address": [ + { + "line": [ + "1, Vale Roads, Claygate", + "Esher", + "Surrey" + ], + "postalCode": "BM17 2QN" + } + ], + "generalPractitioner": [ + { + "identifier": { + "system": "https://fhir.hl7.org.uk/Id/gmp-number", + "value": "G9999999" + }, + "display": "Dr. Aero Smith" + }, + { + "identifier": { + "system": "https://fhir.hl7.org.uk/Id/ODS-code", + "value": "AP123" + }, + "display": "123 Test Practice" + } + ], + "link": [ + { + "other": { + "reference": "https://api.service.nhs.uk/personal-demographics/FHIR/R4/Patient/8449303650" + }, + "type": "seealso" + } + ] +} \ No newline at end of file From 67a985cea0d4efc7ca8d96abb08960d08c175b6f Mon Sep 17 00:00:00 2001 From: KazeemHamzat Date: Wed, 24 Jan 2024 16:49:09 +0000 Subject: [PATCH 3/5] Update Patient-AnitaLambertsMotherDeceasedPatient-Example.json Reverting to code value --- ...ent-AnitaLambertsMotherDeceasedPatient-Example.json | 10 +--------- 1 file changed, 1 insertion(+), 9 deletions(-) diff --git a/Patient/Patient-AnitaLambertsMotherDeceasedPatient-Example.json b/Patient/Patient-AnitaLambertsMotherDeceasedPatient-Example.json index 298e335c..daf79808 100644 --- a/Patient/Patient-AnitaLambertsMotherDeceasedPatient-Example.json +++ b/Patient/Patient-AnitaLambertsMotherDeceasedPatient-Example.json @@ -4,15 +4,7 @@ "extension": [ { "url": "https://fhir.hl7.org.uk/StructureDefinition/Extension-UKCore-BirthSex", - "valueCodeableConcept": { - "coding": [ - { - "system": "https://fhir.hl7.org.uk/CodeSystem/UKCore-BirthSex", - "code": "F", - "display": "Female" - } - ] - } + "valueCode": "F" }, { "url": "https://fhir.hl7.org.uk/StructureDefinition/Extension-UKCore-EthnicCategory", From 0f6e174d5905f56422934f4069ae466a695d8cc7 Mon Sep 17 00:00:00 2001 From: KazeemHamzat Date: Fri, 26 Jan 2024 13:00:05 +0000 Subject: [PATCH 4/5] Update Patient-AnitaLambertsMotherDeceasedPatient-Example.json Change link type to RelatedPerson --- Patient/Patient-AnitaLambertsMotherDeceasedPatient-Example.json | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/Patient/Patient-AnitaLambertsMotherDeceasedPatient-Example.json b/Patient/Patient-AnitaLambertsMotherDeceasedPatient-Example.json index daf79808..ef045659 100644 --- a/Patient/Patient-AnitaLambertsMotherDeceasedPatient-Example.json +++ b/Patient/Patient-AnitaLambertsMotherDeceasedPatient-Example.json @@ -71,7 +71,7 @@ "link": [ { "other": { - "reference": "https://api.service.nhs.uk/personal-demographics/FHIR/R4/Patient/8449303650" + "reference": "RelatedPerson/RelatedPerson-AnitaLambertsDeceasedPatient-Example" }, "type": "seealso" } From ebf4891d54dcfe83dc19ca320560c7fa50847db8 Mon Sep 17 00:00:00 2001 From: KazeemHamzat Date: Tue, 30 Jan 2024 10:27:34 +0000 Subject: [PATCH 5/5] Update Patient-AnitaLambertsMotherDeceasedPatient Add PDS reference. --- .../Patient-AnitaLambertsMotherDeceasedPatient-Example.json | 6 ++++++ 1 file changed, 6 insertions(+) diff --git a/Patient/Patient-AnitaLambertsMotherDeceasedPatient-Example.json b/Patient/Patient-AnitaLambertsMotherDeceasedPatient-Example.json index ef045659..dc978126 100644 --- a/Patient/Patient-AnitaLambertsMotherDeceasedPatient-Example.json +++ b/Patient/Patient-AnitaLambertsMotherDeceasedPatient-Example.json @@ -69,6 +69,12 @@ } ], "link": [ + { + "other": { + "reference": "https://api.service.nhs.uk/personal-demographics/FHIR/R4/Patient/8449303650" + }, + "type": "seealso" + }, { "other": { "reference": "RelatedPerson/RelatedPerson-AnitaLambertsDeceasedPatient-Example"