FILE=MFTraw.cfg

touch $FILE

echo "[input-MFT-0]">>$FILE

echo "dataOrigin = MFT" >>$FILE

echo "dataDescription = RAWDATA" >>$FILE

echo "filePath = /home/o2flp/alice/data_raw/"$1 >> $FILE

echo "Creation of MFTraw.cfg : Done! "

echo "-----------------------------"

echo "Run decoder RDHv6"

timestamp=$(date +"%Y-%m-%d_%H-%M-%S")

log=/home/alice/alice/output/log/decode_$timestamp.out

ROOTFILEPATH=/home/alice/alice/output/

o2-raw-file-reader-workflow -b --nocheck-missing-stop --nocheck-starts-with-tf --nocheck-packet-increment --nocheck-hbf-jump --nocheck-hbf-per-tf --input-conf $FILE | o2-itsmft-stf-decoder-workflow -b --runmft --digits --no-clusters --no-cluster-patterns | o2-itsmft-digit-writer-workflow -b --runmft --disable-mc --outfile $ROOTFILEPATH$1.root > $log

rm -f $FILE

echo "Error Jump in RDH_packetCounter : "

grep -r "Jump in RDH_packetCounter" $log | wc -l

grep -o -P 'FEE.{0,7}' $log

root -l -q -b macro/ChipDecod.C\(\"$ROOTFILEPATH$1.root\"\)

if [ $(echo $1 | grep "charge") ];then

VPULSE=$(echo $1 | sed 's/.*-charge\([0-9_]\+\).*/\1/g')

echo $VPULSE

if [ "$VPULSE" -gt 50 ]; then

echo "We prepare plots from raw data for the Analog scan"

./run_plot.sh $1

else

echo "We analyze the digits to create a S-Curve for the Threshold scan"

./run_threshold.sh $1

fi

echo "We prepare plots from raw data for Noise or Digital scan"

./run_plot.sh $1