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Pull requests: biopython/biopython

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Pull requests list

bwl1289/fix/5137/undefined-symbols
#5141 opened Jan 13, 2026 by BwL1289 Loading…
3 tasks done
1
1
Replace print statements with warnings/stderr in NCBIXML
#5140 opened Jan 11, 2026 by csbiy Loading…
1
5
Silence PDBConstructionWarning in test_PDB_StructureAlignment
#5139 opened Jan 11, 2026 by csbiy Loading…
1
3
Fix Numpy 2.4 compatibility in PDB/vectors.py
#5138 opened Jan 9, 2026 by Augustin-Zidek Loading…
3 tasks done
1
4
Added PERMISSIVE argument to MMCIFParser as in PDBParser.
#5134 opened Jan 6, 2026 by piecole Loading…
3 tasks done
4
Run PSEA in a temporary directory
#5133 opened Jan 6, 2026 by kirandharmar867-maker • Draft
1
6
[pre-commit.ci] autoupdate
#5132 opened Jan 5, 2026 by pre-commit-ci bot Loading…
4
Added depreciation error to MMTFParser.get_structure_from_url since RCSB no longer serves MMTF
#5129 opened Jan 2, 2026 by piecole Loading…
3 tasks done
@JoaoRodrigues
make sure that polar_angle is initialized even if the radius is zero,…
#5127 opened Dec 26, 2025 by mdehoon Loading…
3 tasks done
2
Add editable install warning
#5124 opened Dec 23, 2025 by ACA103 Loading…
6
Improve performance of MMCIFParser
#5121 opened Dec 17, 2025 by ozan Loading…
3 tasks done
3
Avoid http links in Bio.Entrez
#5114 opened Nov 28, 2025 by mdehoon • Draft
3 tasks done
1
chore: add type annotation to Bio/File.py
#5088 opened Oct 24, 2025 by szabgab Loading…
3 tasks done
5
Add type annotations
#5087 opened Oct 24, 2025 by szabgab Loading…
12
Complete C acceleration for melting temperature calculations
#5085 opened Oct 15, 2025 by rhowardstone Loading…
8 tasks done
15
Minor style tweaks from ruff v0.11.10 then black 25.9.0
#5084 opened Oct 15, 2025 by peterjc Loading…
3 tasks done
1
Add __next__ method to FastaTwoLineIterator
#5078 opened Oct 13, 2025 by vihaankulkarni29 Loading…
3
Add support for terminal_columns in Alignment formatting, issue 5035
#5070 opened Sep 19, 2025 by data2code Loading…
1 task
1
30
Added subpopulation function and validation logic
#5042 opened Aug 16, 2025 by timlee-bioinf Loading…
3 tasks
@tiagoantao
1
Add SeqIO read/write support for NCBI 5-column tab-delimited feature tables
#5032 opened Jul 21, 2025 by michaelfm1211 • Draft
3 tasks done
1
3
Replaced print with warn/stderrs in NCBIXML.py
#5030 opened Jul 17, 2025 by head-ease08 Loading…
3 tasks done
1
17
Add option to ignore N-/C-terminus effects in isoelectric point calculation
#5022 opened Jun 27, 2025 by FriedLabJHU Loading…
1 task
2
Accelerated motif search algorithms on dna sequences
#5016 opened Jun 19, 2025 by quim6 Loading…
3 tasks done
8
Remove deprecated Bio.HMM
#5009 opened Jun 17, 2025 by peterjc Loading…
3 tasks done
7
Code-visualization for the biopython codebase
#5008 opened Jun 16, 2025 by ivanmilevtues Loading…
3 tasks done
5
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